INFO:2025-04-29,11:32:14 || apply_oe.py:apply_oe() | Checking input data files...
INFO:2025-04-29,11:32:14 || apply_oe.py:apply_oe() | ...Data file checks complete
INFO:2025-04-29,11:32:14 || apply_oe.py:apply_oe() | Setting up files and directories....
INFO:2025-04-29,11:32:14 || template_construction.py:__init__() | Flightline ID: emit20240214t183844
INFO:2025-04-29,11:32:14 || template_construction.py:stage_files() | Staging /store/brodrick/emit/20250429_priors/support/surface/surface_20240103.json to /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/data/surface.mat
INFO:2025-04-29,11:32:14 || template_construction.py:stage_files() | Staging /store/brodrick/repos/isofit_data/data/emit_osf_uncertainty.txt to /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/data/channelized_uncertainty.txt
INFO:2025-04-29,11:32:14 || template_construction.py:stage_files() | Staging /store/brodrick/repos/isofit_data/data/emit_model_discrepancy.mat to /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/data/model_discrepancy.mat
INFO:2025-04-29,11:32:14 || apply_oe.py:apply_oe() | ...file/directory setup complete
INFO:2025-04-29,11:32:14 || apply_oe.py:apply_oe() | Using inversion windows: [[380.0, 1325.0], [1435, 1770.0], [1965.0, 2500.0]]
INFO:2025-04-29,11:32:14 || apply_oe.py:apply_oe() | No wavelength file provided. Obtaining wavelength grid from ENVI header of radiance cube.
INFO:2025-04-29,11:32:14 || apply_oe.py:apply_oe() | Wavelength units of nm inferred...converting to microns
INFO:2025-04-29,11:32:14 || template_construction.py:check_surface_model() | No surface model provided. Build new one using given config file.
INFO:2025-04-29,11:51:04 || apply_oe.py:apply_oe() | Checking input data files...
INFO:2025-04-29,11:51:04 || apply_oe.py:apply_oe() | ...Data file checks complete
INFO:2025-04-29,11:51:04 || apply_oe.py:apply_oe() | Setting up files and directories....
INFO:2025-04-29,11:51:04 || template_construction.py:__init__() | Flightline ID: emit20240214t183844
INFO:2025-04-29,11:51:04 || apply_oe.py:apply_oe() | ...file/directory setup complete
INFO:2025-04-29,11:51:04 || apply_oe.py:apply_oe() | Using inversion windows: [[380.0, 1325.0], [1435, 1770.0], [1965.0, 2500.0]]
INFO:2025-04-29,11:51:04 || apply_oe.py:apply_oe() | No wavelength file provided. Obtaining wavelength grid from ENVI header of radiance cube.
INFO:2025-04-29,11:51:04 || apply_oe.py:apply_oe() | Wavelength units of nm inferred...converting to microns
INFO:2025-04-29,11:51:04 || template_construction.py:check_surface_model() | No surface model provided. Build new one using given config file.
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | Scene contains a mean target elevation < 0.  6s does not support targets below sea level in km units.  Setting mean elevation to 0.
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | Observation means:
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | Path (km): 425.6346302225448
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | To-sensor azimuth (deg): 130.46740671513413
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | To-sensor zenith (deg): 8.99016920656834
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | To-sun azimuth (deg): 205.28392285503244
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | To-sun zenith (deg): 54.79966561844232
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | Relative to-sun azimuth (deg): 74.81651613989827
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | Altitude (km): 420.4057798870436
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | Adjusting altitude to 99 km for integration with 6S, because emulator is chosen.
INFO:2025-04-29,11:51:05 || apply_oe.py:apply_oe() | Segmenting...
INFO:2025-04-29,11:51:10 ||| 768: starting
INFO:2025-04-29,11:51:10 ||| 256: starting
INFO:2025-04-29,11:51:10 ||| 512: starting
INFO:2025-04-29,11:51:10 ||| 1024: starting
INFO:2025-04-29,11:51:10 ||| 0: starting
INFO:2025-04-29,11:51:32 ||| 768: completing
INFO:2025-04-29,11:51:32 ||| 1024: completing
INFO:2025-04-29,11:51:32 ||| 512: completing
INFO:2025-04-29,11:51:33 ||| 0: completing
INFO:2025-04-29,11:51:33 ||| 256: completing
INFO:2025-04-29,11:51:37 || apply_oe.py:apply_oe() | Extracting /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/input/emit20240214t183844_subs_rdn
INFO:2025-04-29,11:51:37 ||| 768: starting
INFO:2025-04-29,11:51:37 ||| 512: starting
INFO:2025-04-29,11:51:37 ||| 0: starting
INFO:2025-04-29,11:51:37 ||| 256: starting
INFO:2025-04-29,11:51:37 ||| 1024: starting
INFO:2025-04-29,11:51:45 || apply_oe.py:apply_oe() | Extracting /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/input/emit20240214t183844_subs_obs
INFO:2025-04-29,11:51:45 ||| 512: starting
INFO:2025-04-29,11:51:45 ||| 0: starting
INFO:2025-04-29,11:51:45 ||| 256: starting
INFO:2025-04-29,11:51:45 ||| 768: starting
INFO:2025-04-29,11:51:45 ||| 1024: starting
INFO:2025-04-29,11:51:53 || apply_oe.py:apply_oe() | Extracting /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/input/emit20240214t183844_subs_loc
INFO:2025-04-29,11:51:53 ||| 0: starting
INFO:2025-04-29,11:51:53 ||| 256: starting
INFO:2025-04-29,11:51:53 ||| 512: starting
INFO:2025-04-29,11:51:53 ||| 768: starting
INFO:2025-04-29,11:51:53 ||| 1024: starting
INFO:2025-04-29,11:52:00 || apply_oe.py:apply_oe() | Pre-solve H2O grid: [0.01 0.67 1.34 2.   2.67 3.33 4.   4.66 5.33 5.99]
INFO:2025-04-29,11:52:00 || apply_oe.py:apply_oe() | Writing H2O pre-solve configuration file.
INFO:2025-04-29,11:52:00 || apply_oe.py:apply_oe() | Run ISOFIT initial guess
INFO:2025-04-29,11:52:00 || configs.py:create_new_config() | Loading config file: /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/config/emit20240214t183844_h2o.json
INFO:2025-04-29,11:52:00 || configs.py:get_config_errors() | Checking config sections for configuration issues
INFO:2025-04-29,11:52:00 || configs.py:get_config_errors() | Configuration file checks complete, no errors found.
INFO:2025-04-29,11:52:00 || isofit.py:run() | Building first forward model, will generate any necessary LUTs
INFO:2025-04-29,11:52:00 || radiative_transfer_engine.py:__init__() | Loading from wavelength_file: /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/data/wavelengths.txt
INFO:2025-04-29,11:52:00 || radiative_transfer_engine.py:__init__() | No LUT store found, beginning initialization and simulations
INFO:2025-04-29,11:52:00 || radiative_transfer_engine.py:__init__() | Initializing LUT file
INFO:2025-04-29,11:52:00 || radiative_transfer_engine.py:runSimulations() | Running any pre-sim functions
INFO:2025-04-29,11:52:00 || sRTMnet.py:preSim() | Creating a simulator configuration
INFO:2025-04-29,11:52:00 || sRTMnet.py:preSim() | Building simulator and executing (6S)
ERROR:2025-04-29,11:52:00 || six_s.py:__init__() | WARNING: The environment variable $SIXS_DIR does not match the ISOFIT ini
ERROR:2025-04-29,11:52:00 || six_s.py:__init__() | ENV: /store/shared/sixs
ERROR:2025-04-29,11:52:00 || six_s.py:__init__() | INI: /store/brodrick/repos/isofit_data/sixs
ERROR:2025-04-29,11:52:00 || six_s.py:__init__() | This may cause issues, please either set the env to the ini, or override the ini to the env using:
ERROR:2025-04-29,11:52:00 || six_s.py:__init__() |   isofit --sixs $SIXS_DIR ...
INFO:2025-04-29,11:52:00 || radiative_transfer_engine.py:__init__() | No LUT store found, beginning initialization and simulations
INFO:2025-04-29,11:52:00 || radiative_transfer_engine.py:__init__() | Initializing LUT file
INFO:2025-04-29,11:52:00 || radiative_transfer_engine.py:runSimulations() | Running any pre-sim functions
INFO:2025-04-29,11:52:00 || radiative_transfer_engine.py:runSimulations() | Executing parallel simulations
INFO:2025-04-29,11:52:01 ||| Loaded ini from: /home/brodrick/.isofit/isofit.ini
INFO:2025-04-29,11:52:01 ||| Loaded ini from: /home/brodrick/.isofit/isofit.ini
INFO:2025-04-29,11:52:01 ||| Loaded ini from: /home/brodrick/.isofit/isofit.ini
INFO:2025-04-29,11:52:01 ||| Loaded ini from: /home/brodrick/.isofit/isofit.ini
INFO:2025-04-29,11:52:01 ||| Loaded ini from: /home/brodrick/.isofit/isofit.ini
INFO:2025-04-29,11:52:03 || common.py:__call__() |  20.00% simulations complete (elapsed: 0:00:02.687215, rate: 0:00:00.268722, eta: 0:00:24.184935)
INFO:2025-04-29,11:52:03 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:03 || common.py:__call__() |  30.00% simulations complete (elapsed: 0:00:02.776097, rate: 0:00:00.277610, eta: 0:00:11.104388)
INFO:2025-04-29,11:52:03 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:03 || common.py:__call__() |  40.00% simulations complete (elapsed: 0:00:02.853809, rate: 0:00:00.285381, eta: 0:00:06.658888)
INFO:2025-04-29,11:52:03 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:03 || common.py:__call__() |  50.00% simulations complete (elapsed: 0:00:02.931514, rate: 0:00:00.293151, eta: 0:00:04.397271)
INFO:2025-04-29,11:52:03 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:04 || common.py:__call__() |  60.00% simulations complete (elapsed: 0:00:03.257793, rate: 0:00:00.325779, eta: 0:00:03.257793)
INFO:2025-04-29,11:52:04 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:04 || common.py:__call__() |  70.00% simulations complete (elapsed: 0:00:03.345113, rate: 0:00:00.334511, eta: 0:00:02.230075)
INFO:2025-04-29,11:52:04 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:04 || common.py:__call__() |  80.00% simulations complete (elapsed: 0:00:03.422724, rate: 0:00:00.342272, eta: 0:00:01.466882)
INFO:2025-04-29,11:52:04 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:04 || common.py:__call__() |  90.00% simulations complete (elapsed: 0:00:03.501136, rate: 0:00:00.350114, eta: 0:00:00.875284)
INFO:2025-04-29,11:52:04 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:04 || common.py:__call__() | 100.00% simulations complete (elapsed: 0:00:03.579589, rate: 0:00:00.357959, eta: 0:00:00.397732)
INFO:2025-04-29,11:52:04 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:04 || radiative_transfer_engine.py:runSimulations() | Running any post-sim functions
INFO:2025-04-29,11:52:04 || radiative_transfer_engine.py:runSimulations() | Saving post-sim data to index zero of all dimensions except wl
INFO:2025-04-29,11:52:05 || luts.py:load() | Loading LUT into memory
WARNING:2025-04-29,11:52:05 || luts.py:load() | thermal_upwelling is fully NaN, leaving as-is
WARNING:2025-04-29,11:52:05 || luts.py:load() | thermal_downwelling is fully NaN, leaving as-is
INFO:2025-04-29,11:52:05 || sRTMnet.py:preSim() | Interpolating simulator quantities to emulator size
INFO:2025-04-29,11:52:05 || sRTMnet.py:preSim() | Loading and predicting with emulator
INFO:2025-04-29,11:52:09 || sRTMnet.py:preSim() | Saving intermediary prediction results to: /store/brodrick/emit/20250429_priors/v001/l2a/emit20240214t183844/lut_h2o/sRTMnet.predicts.nc
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Saving pre-sim data to index zero of all dimensions except wl
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Executing parallel simulations
INFO:2025-04-29,11:52:10 ||| Loading LUT into memory
INFO:2025-04-29,11:52:10 ||| Loading LUT into memory
INFO:2025-04-29,11:52:10 ||| Loading LUT into memory
INFO:2025-04-29,11:52:10 ||| Loading LUT into memory
INFO:2025-04-29,11:52:10 ||| Loading LUT into memory
INFO:2025-04-29,11:52:10 || common.py:__call__() |  20.00% simulations complete (elapsed: 0:00:00.229708, rate: 0:00:00.022971, eta: 0:00:02.067372)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || common.py:__call__() |  30.00% simulations complete (elapsed: 0:00:00.303061, rate: 0:00:00.030306, eta: 0:00:01.212244)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || common.py:__call__() |  40.00% simulations complete (elapsed: 0:00:00.366306, rate: 0:00:00.036631, eta: 0:00:00.854714)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || common.py:__call__() |  50.00% simulations complete (elapsed: 0:00:00.428820, rate: 0:00:00.042882, eta: 0:00:00.643230)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || common.py:__call__() |  60.00% simulations complete (elapsed: 0:00:00.492145, rate: 0:00:00.049214, eta: 0:00:00.492145)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || common.py:__call__() |  70.00% simulations complete (elapsed: 0:00:00.577367, rate: 0:00:00.057737, eta: 0:00:00.384911)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || common.py:__call__() |  80.00% simulations complete (elapsed: 0:00:00.638694, rate: 0:00:00.063869, eta: 0:00:00.273726)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || common.py:__call__() |  90.00% simulations complete (elapsed: 0:00:00.700921, rate: 0:00:00.070092, eta: 0:00:00.175230)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || common.py:__call__() | 100.00% simulations complete (elapsed: 0:00:00.764055, rate: 0:00:00.076406, eta: 0:00:00.084895)
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Flushing netCDF to disk
INFO:2025-04-29,11:52:10 || radiative_transfer_engine.py:runSimulations() | Running any post-sim functions
INFO:2025-04-29,11:52:11 || luts.py:load() | Loading LUT into memory
WARNING:2025-04-29,11:52:11 || luts.py:load() | thermal_upwelling is fully NaN, leaving as-is
WARNING:2025-04-29,11:52:11 || luts.py:load() | thermal_downwelling is fully NaN, leaving as-is