#!/usr/bin/env python

import glob, shutil, sys


flights = '/lustre/athorpe/ch4/ORNL_Nature_CH4/Nature_AVng_Flightlines.txt'
src = '/lustre/ang/y17/cmf/ort/'
#src = '/lustre/ang/y16/cmf/ort/'
#src = '/lustre/athorpe/ch4/ORNL_Nature_CH4/Test_From/'
dst = '/lustre/athorpe/ch4/ORNL_Nature_CH4/Selected_Renamed_3/'

# Read in text file of flights

with open(flights, "r") as fd:
  lines = fd.read().splitlines()

print ('lines:',lines)
print len(lines)

# Go through each flight line and generate a list of all the files (including multiple versions)

for f in range(0,len(lines)):
  flight=lines[f]
  print('flight:',flight)
  print('f:',f)
  for file in sorted(glob.glob(src+flight+'*')):
    print('file:',file)
    #Seperate path to isolate the name
    test=file.split("/")[-1]
    print('split:',test)
    if not "hdr" in file:
      shutil.copy(file, dst+flight+'_cmf_pub_img')
    if "hdr" in file:
      shutil.copy(file, dst+flight+'_cmf_pub_img.hdr')